ATACQC:
  ATACseqQC: 1.16.0
  GenomicFeatures: 1.44.0
  rtracklayer: 1.52.0
BEDTOOLS_GENOMECOV_PER_SAMPLE:
  bedtools: 2.30.0
BIOC_CHIPPEAKANNO:
  ChIPpeakAnno: 3.32.0
  GenomicFeatures: 1.50.2
  ggplot2: 3.4.0
  rtracklayer: 1.58.0
BIOC_ENZYMECUT:
  BSgenome: 1.60.0
  Biostrings: 2.60.0
  GenomicRanges: 1.44.0
BWA_MEM:
  bwa: 0.7.17-r1188
  samtools: 1.16.1
CHECKSUMS:
  python: ''
CIRCOS:
  circos: 0.69-8
CIRCOS_PREPARE:
  rtracklayer: 1.50.0
COOLER_CLOAD:
  cooler: 0.8.11
COOLER_DIGEST:
  cooler: 0.8.11
COOLTOOLS_EIGSCIS:
  cooltools: 0.5.1
CUSTOM_DUMPSOFTWAREVERSIONS:
  python: 3.11.0
  yaml: '6.0'
DIFFHIC:
  diffHic: 1.26.0
  edgeR: 3.36.0
DUMPREADS_PER_GROUP:
  awk: 5.1.0
DUMP_READS_PER_GROUP:
  awk: 5.1.0
ENSEMBL_UCSC_CONVERT1:
  GenomeInfoDb: 1.26.4
  rtracklayer: 1.50.0
FASTQC:
  fastqc: 0.11.9
GENMAP_MAPPABILITY:
  genmap: 1.3.0
GENOME_FILTER:
  awk: :'--'1.22.12014-05-2301:24:27-.:[][_][]...-=---_::-1.22.12014-05-2301:24:27-.:[][_][]...-=---_
HICEXPLORER_HICFINDTADS:
  hicexplorer: 3.7.2
HICEXPLORER_HICPLOTTADS:
  hicexplorer: '3.6'
JUICER_PRE:
  java: 3.30.00
MACS2_CALLPEAK:
  macs2: 2.2.7.1
MAPS_CALLPEAK:
  MAPS: 1.1.0
MAPS_MAPS:
  MAPS: 1.1.0
MAPS_REFORMAT:
  MAPS: 1.1.0
MERGE_INTERACTIONS:
  rtracklayer: 1.50.0
MERGE_READS:
  gzip: :'--'1.22.12014-05-2301:24:27)-.:[-][]...)---
PAIRTOOLS_PARSE:
  pairtools: 1.0.2
PAIRTOOLS_SELECT_SHORT:
  pairtools: 1.0.2
RE_CUTSITE:
  python: 3.9.1
SAMTOOLS_MERGE:
  samtools: '1.17'
SAMTOOLS_SORT:
  samtools: '1.17'
SHIFT_READS:
  awk: 5.1.0
UCSC_BEDGRAPHTOBIGWIG_PER_SAMPLE:
  ucsc: '377'
UCSC_BIGWIGAVERAGEOVERBED:
  ucsc: '377'
UCSC_WIGTOBIGWIG:
  ucsc: '377'
Workflow:
  Nextflow: 23.10.1
  nf-core/hicar: 2.0.0