Sample Filename File type Encoding Total Sequences Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage avg_sequence_length median_sequence_length basic_statistics per_base_sequence_quality per_tile_sequence_quality per_sequence_quality_scores per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content CM_REP1_T1_1 CM_REP1_T1_1.gz Conventional base calls Sanger / Illumina 1.9 105577174.0 0.0 151.0 43.0 40.83010545775848 151.0 151 pass pass pass pass fail pass pass pass fail pass fail CM_REP1_T1_2 CM_REP1_T1_2.gz Conventional base calls Sanger / Illumina 1.9 105577174.0 0.0 151.0 42.0 42.54510767232615 151.0 151 pass pass pass pass fail pass pass pass fail pass fail CM_REP2_T1_1 CM_REP2_T1_1.gz Conventional base calls Sanger / Illumina 1.9 109292231.0 0.0 151.0 42.0 34.771319479430154 151.0 151 pass pass pass pass fail warn pass pass fail pass fail CM_REP2_T1_2 CM_REP2_T1_2.gz Conventional base calls Sanger / Illumina 1.9 109292231.0 0.0 151.0 42.0 39.741939015799886 151.0 151 pass pass pass pass fail warn pass pass fail pass fail CM_REP3_T1_1 CM_REP3_T1_1.gz Conventional base calls Sanger / Illumina 1.9 184216618.0 0.0 151.0 42.0 37.732960998477935 151.0 151 pass pass pass pass fail pass pass pass fail warn fail CM_REP3_T1_2 CM_REP3_T1_2.gz Conventional base calls Sanger / Illumina 1.9 184216618.0 0.0 151.0 42.0 42.74569302616657 151.0 151 pass pass pass pass fail pass pass pass fail warn fail iPSC_REP1_T1_1 iPSC_REP1_T1_1.gz Conventional base calls Sanger / Illumina 1.9 144217364.0 0.0 151.0 43.0 28.317157652495695 151.0 151 pass pass warn pass fail warn pass pass fail pass fail iPSC_REP1_T1_2 iPSC_REP1_T1_2.gz Conventional base calls Sanger / Illumina 1.9 144217364.0 0.0 151.0 43.0 29.67458666148361 151.0 151 pass pass warn pass fail warn pass pass fail pass fail iPSC_REP2_T1_1 iPSC_REP2_T1_1.gz Conventional base calls Sanger / Illumina 1.9 121953695.0 0.0 151.0 43.0 71.77509707366043 151.0 151 pass pass warn pass fail pass pass pass pass pass fail iPSC_REP2_T1_2 iPSC_REP2_T1_2.gz Conventional base calls Sanger / Illumina 1.9 121953695.0 0.0 151.0 43.0 72.95231661653985 151.0 151 pass pass warn pass fail pass pass pass pass pass fail