FastQCFastQC Report
Thu 29 Feb 2024
CM_REP3_T1_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCM_REP3_T1_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184216618
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAAGATATCGCGTACGCGATATCTTATCTGACTACGCGATATCTTATC2640210.14332094621344096No Hit
GATAAGATATCGCGTAGTCAGATAAGATATCGCGTACGCGATATCTTATC2461160.13360141048729923No Hit
GATAAGATATCGCGTACGCGATATCTTATCTGACTAGTCAGATAAGATAT2288230.12421409234643532No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)