FastQCFastQC Report
Thu 29 Feb 2024
CM_REP3_T1_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCM_REP3_T1_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184216618
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAAGATATCGCGTAGTCAGATAAGATATCGCGTACGCGATATCTTATC2753170.14945285772209757No Hit
GATAAGATATCGCGTACGCGATATCTTATCTGACTACGCGATATCTTATC2617500.1420881584092484No Hit
GATAAGATATCGCGTACGCGATATCTTATCTGACTAGTCAGATAAGATAT2466180.13387391576149768No Hit
GATAAGATATCGCGTAGTCAGATAAGATATCGCGTAGTCAGATAAGATAT1900970.10319210181135775No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)