271146133 + 0 in total (QC-passed reads + QC-failed reads) 218584462 + 0 primary 0 + 0 secondary 52561671 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 268926546 + 0 mapped (99.18% : N/A) 216364875 + 0 primary mapped (98.98% : N/A) 218584462 + 0 paired in sequencing 109292231 + 0 read1 109292231 + 0 read2 0 + 0 properly paired (0.00% : N/A) 215779324 + 0 with itself and mate mapped 585551 + 0 singletons (0.27% : N/A) 19169368 + 0 with mate mapped to a different chr 15043027 + 0 with mate mapped to a different chr (mapQ>=5)