267557839 + 0 in total (QC-passed reads + QC-failed reads) 211154348 + 0 primary 0 + 0 secondary 56403491 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 259863102 + 0 mapped (97.12% : N/A) 203459611 + 0 primary mapped (96.36% : N/A) 211154348 + 0 paired in sequencing 105577174 + 0 read1 105577174 + 0 read2 0 + 0 properly paired (0.00% : N/A) 202536132 + 0 with itself and mate mapped 923479 + 0 singletons (0.44% : N/A) 10174528 + 0 with mate mapped to a different chr 4609474 + 0 with mate mapped to a different chr (mapQ>=5)