Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer | 1e-59 | -1.374e+02 | 0.0000 | 890.0 | 9.79% | 2261.7 | 5.48% | motif file (matrix) |
svg |
2 |
| Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer | 1e-48 | -1.114e+02 | 0.0000 | 1697.0 | 18.66% | 5441.2 | 13.18% | motif file (matrix) |
svg |
3 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-35 | -8.144e+01 | 0.0000 | 1917.0 | 21.08% | 6641.8 | 16.08% | motif file (matrix) |
svg |
4 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-34 | -8.024e+01 | 0.0000 | 2850.0 | 31.34% | 10547.4 | 25.54% | motif file (matrix) |
svg |
5 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-33 | -7.627e+01 | 0.0000 | 2106.0 | 23.16% | 7482.8 | 18.12% | motif file (matrix) |
svg |
6 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-32 | -7.540e+01 | 0.0000 | 1122.0 | 12.34% | 3551.7 | 8.60% | motif file (matrix) |
svg |
7 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-31 | -7.255e+01 | 0.0000 | 3025.0 | 33.27% | 11414.4 | 27.64% | motif file (matrix) |
svg |
8 |
| Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer | 1e-30 | -7.062e+01 | 0.0000 | 2660.0 | 29.25% | 9885.1 | 23.94% | motif file (matrix) |
svg |
9 |
| Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer | 1e-23 | -5.492e+01 | 0.0000 | 1474.0 | 16.21% | 5178.6 | 12.54% | motif file (matrix) |
svg |
10 |
| Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-21 | -5.054e+01 | 0.0000 | 708.0 | 7.79% | 2205.1 | 5.34% | motif file (matrix) |
svg |
11 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-20 | -4.813e+01 | 0.0000 | 1152.0 | 12.67% | 3967.3 | 9.61% | motif file (matrix) |
svg |
12 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-16 | -3.805e+01 | 0.0000 | 4005.0 | 44.04% | 16403.4 | 39.72% | motif file (matrix) |
svg |
13 |
| Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer | 1e-13 | -3.117e+01 | 0.0000 | 1590.0 | 17.49% | 6040.3 | 14.63% | motif file (matrix) |
svg |
14 |
| ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer | 1e-10 | -2.515e+01 | 0.0000 | 1940.0 | 21.34% | 7663.7 | 18.56% | motif file (matrix) |
svg |
15 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-10 | -2.422e+01 | 0.0000 | 1938.0 | 21.31% | 7677.6 | 18.59% | motif file (matrix) |
svg |
16 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-9 | -2.295e+01 | 0.0000 | 2160.0 | 23.75% | 8670.6 | 21.00% | motif file (matrix) |
svg |
17 |
| Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer | 1e-9 | -2.164e+01 | 0.0000 | 1305.0 | 14.35% | 5033.9 | 12.19% | motif file (matrix) |
svg |
18 |
| TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer | 1e-9 | -2.135e+01 | 0.0000 | 2551.0 | 28.05% | 10422.9 | 25.24% | motif file (matrix) |
svg |
19 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-9 | -2.074e+01 | 0.0000 | 1406.0 | 15.46% | 5482.8 | 13.28% | motif file (matrix) |
svg |
20 |
| Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer | 1e-8 | -1.979e+01 | 0.0000 | 728.0 | 8.01% | 2662.0 | 6.45% | motif file (matrix) |
svg |
21 |
| TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer | 1e-8 | -1.913e+01 | 0.0000 | 4909.0 | 53.99% | 21050.2 | 50.98% | motif file (matrix) |
svg |
22 |
| TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer | 1e-7 | -1.764e+01 | 0.0000 | 2880.0 | 31.67% | 11991.1 | 29.04% | motif file (matrix) |
svg |
23 |
| GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-6 | -1.589e+01 | 0.0000 | 353.0 | 3.88% | 1207.3 | 2.92% | motif file (matrix) |
svg |
24 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-6 | -1.452e+01 | 0.0000 | 3600.0 | 39.59% | 15318.9 | 37.10% | motif file (matrix) |
svg |
25 |
| Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer | 1e-5 | -1.315e+01 | 0.0000 | 492.0 | 5.41% | 1809.5 | 4.38% | motif file (matrix) |
svg |
26 |
| SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer | 1e-5 | -1.239e+01 | 0.0001 | 1039.0 | 11.43% | 4126.3 | 9.99% | motif file (matrix) |
svg |
27 |
| Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-4 | -1.129e+01 | 0.0002 | 528.0 | 5.81% | 1993.4 | 4.83% | motif file (matrix) |
svg |
28 |
| Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.124e+01 | 0.0002 | 581.0 | 6.39% | 2215.2 | 5.36% | motif file (matrix) |
svg |
29 |
| ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer | 1e-4 | -1.025e+01 | 0.0005 | 666.0 | 7.32% | 2595.8 | 6.29% | motif file (matrix) |
svg |
30 |
| PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer | 1e-4 | -1.011e+01 | 0.0006 | 2234.0 | 24.57% | 9421.1 | 22.81% | motif file (matrix) |
svg |
31 |
| CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer | 1e-4 | -9.770e+00 | 0.0008 | 812.0 | 8.93% | 3228.7 | 7.82% | motif file (matrix) |
svg |
32 |
| Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer | 1e-4 | -9.377e+00 | 0.0011 | 1605.0 | 17.65% | 6680.1 | 16.18% | motif file (matrix) |
svg |
33 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-4 | -9.352e+00 | 0.0011 | 1980.0 | 21.77% | 8331.8 | 20.18% | motif file (matrix) |
svg |
34 |
| Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer | 1e-3 | -8.857e+00 | 0.0018 | 2314.0 | 25.45% | 9832.6 | 23.81% | motif file (matrix) |
svg |
35 |
| VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer | 1e-3 | -8.621e+00 | 0.0022 | 490.0 | 5.39% | 1892.2 | 4.58% | motif file (matrix) |
svg |
36 |
| Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer | 1e-3 | -8.216e+00 | 0.0032 | 1180.0 | 12.98% | 4867.1 | 11.79% | motif file (matrix) |
svg |
37 |
| Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer | 1e-3 | -8.031e+00 | 0.0038 | 1703.0 | 18.73% | 7167.4 | 17.36% | motif file (matrix) |
svg |
38 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-3 | -8.022e+00 | 0.0038 | 619.0 | 6.81% | 2453.6 | 5.94% | motif file (matrix) |
svg |
39 |
| Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-3 | -7.984e+00 | 0.0038 | 426.0 | 4.68% | 1638.9 | 3.97% | motif file (matrix) |
svg |
40 |
| Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer | 1e-3 | -7.359e+00 | 0.0068 | 2510.0 | 27.60% | 10780.1 | 26.11% | motif file (matrix) |
svg |
41 |
| LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer | 1e-3 | -7.295e+00 | 0.0071 | 1802.0 | 19.82% | 7638.5 | 18.50% | motif file (matrix) |
svg |
42 |
| Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer | 1e-3 | -7.271e+00 | 0.0071 | 345.0 | 3.79% | 1315.9 | 3.19% | motif file (matrix) |
svg |
43 |
| ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer | 1e-3 | -7.214e+00 | 0.0073 | 583.0 | 6.41% | 2322.7 | 5.62% | motif file (matrix) |
svg |
44 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-3 | -7.210e+00 | 0.0073 | 1771.0 | 19.48% | 7505.0 | 18.17% | motif file (matrix) |
svg |
45 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.126e+00 | 0.0076 | 901.0 | 9.91% | 3694.7 | 8.95% | motif file (matrix) |
svg |
46 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-3 | -7.103e+00 | 0.0077 | 608.0 | 6.69% | 2432.5 | 5.89% | motif file (matrix) |
svg |
47 |
| Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer | 1e-3 | -6.994e+00 | 0.0084 | 893.0 | 9.82% | 3664.3 | 8.87% | motif file (matrix) |
svg |
48 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-2 | -6.711e+00 | 0.0109 | 1129.0 | 12.42% | 4703.6 | 11.39% | motif file (matrix) |
svg |
49 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-2 | -6.590e+00 | 0.0120 | 218.0 | 2.40% | 804.0 | 1.95% | motif file (matrix) |
svg |
50 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -6.587e+00 | 0.0120 | 568.0 | 6.25% | 2276.4 | 5.51% | motif file (matrix) |
svg |
51 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-2 | -6.583e+00 | 0.0120 | 2264.0 | 24.90% | 9726.5 | 23.55% | motif file (matrix) |
svg |
52 |
| Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.531e+00 | 0.0120 | 1191.0 | 13.10% | 4982.0 | 12.06% | motif file (matrix) |
svg |
53 |
| Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer | 1e-2 | -6.450e+00 | 0.0128 | 3018.0 | 33.19% | 13106.2 | 31.74% | motif file (matrix) |
svg |
54 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-2 | -6.447e+00 | 0.0128 | 927.0 | 10.19% | 3832.5 | 9.28% | motif file (matrix) |
svg |
55 |
| Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer | 1e-2 | -6.259e+00 | 0.0149 | 410.0 | 4.51% | 1612.8 | 3.91% | motif file (matrix) |
svg |
56 |
| MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer | 1e-2 | -6.095e+00 | 0.0172 | 3611.0 | 39.71% | 15797.4 | 38.26% | motif file (matrix) |
svg |
57 |
| DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer | 1e-2 | -6.017e+00 | 0.0183 | 151.0 | 1.66% | 540.6 | 1.31% | motif file (matrix) |
svg |
58 |
| Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer | 1e-2 | -5.984e+00 | 0.0186 | 536.0 | 5.89% | 2157.3 | 5.22% | motif file (matrix) |
svg |
59 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-2 | -5.964e+00 | 0.0186 | 1805.0 | 19.85% | 7720.0 | 18.70% | motif file (matrix) |
svg |
60 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-2 | -5.917e+00 | 0.0192 | 2463.0 | 27.09% | 10653.6 | 25.80% | motif file (matrix) |
svg |
61 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.863e+00 | 0.0199 | 477.0 | 5.25% | 1908.8 | 4.62% | motif file (matrix) |
svg |
62 |
| Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer | 1e-2 | -5.851e+00 | 0.0199 | 1585.0 | 17.43% | 6750.2 | 16.35% | motif file (matrix) |
svg |
63 |
| Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer | 1e-2 | -5.842e+00 | 0.0199 | 1675.0 | 18.42% | 7149.5 | 17.31% | motif file (matrix) |
svg |
64 |
| PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.729e+00 | 0.0217 | 725.0 | 7.97% | 2981.1 | 7.22% | motif file (matrix) |
svg |
65 |
| Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer | 1e-2 | -5.652e+00 | 0.0231 | 1198.0 | 13.17% | 5052.4 | 12.24% | motif file (matrix) |
svg |
66 |
| PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer | 1e-2 | -5.557e+00 | 0.0250 | 724.0 | 7.96% | 2983.7 | 7.23% | motif file (matrix) |
svg |
67 |
| ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer | 1e-2 | -5.548e+00 | 0.0250 | 285.0 | 3.13% | 1102.1 | 2.67% | motif file (matrix) |
svg |
68 |
| ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.448e+00 | 0.0271 | 222.0 | 2.44% | 841.4 | 2.04% | motif file (matrix) |
svg |
69 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-2 | -5.378e+00 | 0.0286 | 539.0 | 5.93% | 2189.2 | 5.30% | motif file (matrix) |
svg |
70 |
| MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.351e+00 | 0.0290 | 848.0 | 9.33% | 3531.1 | 8.55% | motif file (matrix) |
svg |
71 |
| HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.339e+00 | 0.0290 | 376.0 | 4.14% | 1492.3 | 3.61% | motif file (matrix) |
svg |
72 |
| GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.223e+00 | 0.0321 | 236.0 | 2.60% | 904.4 | 2.19% | motif file (matrix) |
svg |
73 |
| Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer | 1e-2 | -5.212e+00 | 0.0321 | 2591.0 | 28.49% | 11271.6 | 27.30% | motif file (matrix) |
svg |
74 |
| Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer | 1e-2 | -5.104e+00 | 0.0351 | 301.0 | 3.31% | 1180.0 | 2.86% | motif file (matrix) |
svg |
75 |
| Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-2 | -5.043e+00 | 0.0369 | 1128.0 | 12.41% | 4773.6 | 11.56% | motif file (matrix) |
svg |
76 |
| ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.036e+00 | 0.0369 | 266.0 | 2.93% | 1034.8 | 2.51% | motif file (matrix) |
svg |
77 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-2 | -5.031e+00 | 0.0369 | 1944.0 | 21.38% | 8391.9 | 20.32% | motif file (matrix) |
svg |
78 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.991e+00 | 0.0373 | 1251.0 | 13.76% | 5318.1 | 12.88% | motif file (matrix) |
svg |
79 |
| NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -4.978e+00 | 0.0373 | 171.0 | 1.88% | 639.8 | 1.55% | motif file (matrix) |
svg |
80 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-2 | -4.668e+00 | 0.0502 | 2127.0 | 23.39% | 9231.3 | 22.36% | motif file (matrix) |
svg |
81 |
| THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer | 1e-2 | -4.642e+00 | 0.0509 | 1205.0 | 13.25% | 5133.3 | 12.43% | motif file (matrix) |
svg |
82 |
| ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.621e+00 | 0.0514 | 385.0 | 4.23% | 1551.6 | 3.76% | motif file (matrix) |
svg |